TCRD v6.10.0 Release Date: 20210413 ====================== This README describes changes from v6.8.4 JensenLab PubMed Scores ======================= JensenLab PubMed text-mining scores have been reloaded. This includes all rows in the pmscore table and the rows in tdl_info where itype = 'JensenLab PubMed Score'. Also, since PubMed Scores are a component of TDL calculation, TDLs were recalculated and updated. JensenLab DISEASES ================== The disease associations from DISEASES have been updated. TIN-X Data ========== TIN-X data has been regenerated and reloaded. Due to the large increase in the number of text-mining results I have changed the primary keys and foreign keys in the tinx_importance and tinx_articlerank tables. PubMed data for pmids in tinx_articlerank that were not previously in TCRD were added to the pubmed table. TIGA ==== There has been an update to TIGA since v6.8.4 and the structre of the tiga table and all of the TIGA data have been updated accordingly. Extlinks ======== Created new table extlink for tested links to external resources: +------------+------------------------------+------+-----+---------+----------------+ | Field | Type | Null | Key | Default | Extra | +------------+------------------------------+------+-----+---------+----------------+ | id | int(11) | NO | PRI | NULL | auto_increment | | protein_id | int(11) | NO | MUL | NULL | | | source | enum('GlyGen','TIGA') | NO | | NULL | | | url | text | NO | | NULL | | +------------+------------------------------+------+-----+---------+----------------+ For this release, there are extlinks for GlyGen and TIGA: mysql> select source, count(*) from extlink group by source; +--------+----------+ | source | count(*) | +--------+----------+ | GlyGen | 20225 | | TIGA | 10692 | +--------+----------+